Split Reads
Manipulating NGS data with Galaxy - Galaxy Community Hub
Common sources of 5′end soft clipping and mismatches in 3′ end seq. (a)... | Download Scientific Diagram
Frontiers | MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Frontiers | SIns: A Novel Insertion Detection Approach Based on Soft-Clipped Reads
Accurate Detection and Quantification of FLT3 Internal Tandem Duplications in Clinical Hybrid Capture Next-Generation Sequencing Data - ScienceDirect
A customized scaffolds approach for the detection and phasing of complex variants by next-generation sequencing | Scientific Reports
sequence alignment - What is local realignment and what is the problem it solves? - Bioinformatics Stack Exchange
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research. - Abstract - Europe PMC
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Confluence Mobile - Integrated Genome Browser Help Pages
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Soft Clipping: Explained + How To Use It
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
Reads filtering · Issue #879 · igvteam/igv.js · GitHub
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly | Genome Medicine | Full Text
eKLIPse: a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data - ScienceDirect
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Scientific Reports
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
Common sources of 5′end soft clipping and mismatches in 3′ end seq. (a)... | Download Scientific Diagram
The flow chart of TDNAscan pipeline. Types A and B of soft-clipped... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
![PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/16b34a01c549bc1b12b6c5a17e85e1db117f26e3/2-Figure1-1.png "PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar")